PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000849944
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 310aa    MW: 35826.9 Da    PI: 6.629
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000849944genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.27.5e-5451331128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                    +ppGfrFhPt+eelv +yLk+k+++ +++l +vi ++d+yk+ePwd+++     ++e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+dk+vl
  MDP0000849944   5 VPPGFRFHPTEEELVGYYLKRKINSLHIDL-DVIVDIDLYKIEPWDIQArcrLGYSEQNEWYFFSHKDKKYPTGTRTNRATVAGFWKATGRDKAVL 99 
                    69****************************.99**************953543344778************************************* PP

            NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                    s k++ +g++ktLvfykgrap+g+ktdW+mheyrl
  MDP0000849944 100 S-KDNIIGMRKTLVFYKGRAPNGNKTDWIMHEYRL 133
                    *.8899***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-593154IPR003441NAC domain
PROSITE profilePS5100557.6765154IPR003441NAC domain
PfamPF023653.5E-286133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009735Biological Processresponse to cytokinin
GO:0009737Biological Processresponse to abscisic acid
GO:0009741Biological Processresponse to brassinosteroid
GO:0045491Biological Processxylan metabolic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:0050832Biological Processdefense response to fungus
GO:0071365Biological Processcellular response to auxin stimulus
GO:0090059Biological Processprotoxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MESCVPPGFR FHPTEEELVG YYLKRKINSL HIDLDVIVDI DLYKIEPWDI QARCRLGYSE  60
QNEWYFFSHK DKKYPTGTRT NRATVAGFWK ATGRDKAVLS KDNIIGMRKT LVFYKGRAPN  120
GNKTDWIMHE YRLQTSEHAP PQEEGWVVCR AFKKPSPSHR QGFEAWKHAY VRDHPSSSNF  180
SSEIPMLINP NQGFHQSFGS EEDHFVSNNI FLGNQLMELP QLESPTISTS FVTKEHVLRS  240
NNISTDDYEA ERSNNNSSNQ HIDWRNLDNL LEVQLTDRAS FSHPSLSSAP QNYEQETQNN  300
HLLGCFRDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-48516017171NO APICAL MERISTEM PROTEIN
1ut4_B2e-48516017171NO APICAL MERISTEM PROTEIN
1ut7_A2e-48516017171NO APICAL MERISTEM PROTEIN
1ut7_B2e-48516017171NO APICAL MERISTEM PROTEIN
4dul_A2e-48516017171NAC domain-containing protein 19
4dul_B2e-48516017171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00017PBMTransfer from AT1G71930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ9199620.0KJ919962.1 Eriobotrya japonica NAC1 transcription factor (NAC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008358342.10.0PREDICTED: NAC domain-containing protein 7-like
SwissprotQ9C8W91e-117NAC30_ARATH; NAC domain-containing protein 30
TrEMBLA0A0H3VAL90.0A0A0H3VAL9_9R
STRINGVIT_18s0072g01060.t011e-142(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71383247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.11e-110vascular related NAC-domain protein 7